PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN41179.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 229aa    MW: 26438.4 Da    PI: 6.3974
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN41179.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.88.9e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd++lv++++++G  +W++ ++  g+ R++k+c++rw++yl
       KHN41179.1 14 KGTWTPEEDKKLVEYITRYGHWNWRLLPKFAGLARCGKSCRLRWLNYL 61
                     799*****************99************************97 PP

2Myb_DNA-binding59.76.2e-1967111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T+eE+e ++++++ lG++ W++Ia++m+ gRt++++k++w++ 
       KHN41179.1  67 RGNYTKEEEETIIKLHRHLGNR-WSAIAARMP-GRTDNEIKNHWHTN 111
                      899*******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.217961IPR017930Myb domain
SuperFamilySSF466891.51E-2911108IPR009057Homeodomain-like
SMARTSM007172.7E-111363IPR001005SANT/Myb domain
PfamPF002495.6E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-231568IPR009057Homeodomain-like
CDDcd001671.86E-91661No hitNo description
PROSITE profilePS5129426.60762116IPR017930Myb domain
SMARTSM007171.4E-1766114IPR001005SANT/Myb domain
PfamPF002493.2E-1767111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-2569115IPR009057Homeodomain-like
CDDcd001673.05E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MVRTPSCDKN GVKKGTWTPE EDKKLVEYIT RYGHWNWRLL PKFAGLARCG KSCRLRWLNY  60
LRPNLKRGNY TKEEEETIIK LHRHLGNRWS AIAARMPGRT DNEIKNHWHT NLKKRSQQDS  120
VATESIVSNS NDQSPTEQPT ANTTFQSFNS TTQDCSPLSQ HSSPSTSTVV STENLVLMED  180
EFAFWDSDTD LMSGNFWLEP YILDISYVPA SEPEYSSQVF DVELWSHDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29141157107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150392e-37AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003526305.21e-173PREDICTED: myb-related protein Myb4-like
SwissprotQ7XBH43e-62MYB4_ORYSJ; Myb-related protein Myb4
TrEMBLA0A0B2SA671e-173A0A0B2SA67_GLYSO; Myb-related protein Myb4
STRINGGLYMA06G45554.11e-172(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-61myb domain protein 14
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]